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Trans-eQTLs across different cancer types

In trans-eQTL analysis, we identified 231,210 eQTL−gene pairs at FDR < 0.05 in 33 cancer types for users to search or browse.

     

e.g., "PRAD"
e.g., "rs7231881"
e.g., "SMAD4"


     

Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-valule
Display
THCA rs6414303 chr3:125794616 A/T ROPN1 chr3:123687368-123711025:- -0.33 -6.11 2.01E-9 Box Plot
THCA rs6414906 chr5:45406321 T/C LOC647121 chr1:121260910-121313686:+ 0.36 7.7 8.09E-14 Box Plot
THCA rs6414909 chr5:46138228 C/G LOC647121 chr1:121260910-121313686:+ 0.37 7.93 1.52E-14 Box Plot
THCA rs6415262 chr7:33079848 A/C FKBP9L chr7:55748767-55780945:- 0.4 8.99 5.96E-18 Box Plot
THCA rs6416611 chr16:20471090 T/C ZMYND12 chr1:42896000-42921938:- 0.26 5.94 5.63E-9 Box Plot
THCA rs6421385 chr10:88914724 C/T FAM35B chr10:46897641-46939143:+ 0.37 7.23 1.87E-12 Box Plot
THCA rs6423746 chr10:88951009 C/G FAM35B chr10:46897641-46939143:+ 0.61 9.95 2.51E-21 Box Plot
THCA rs642699 chr17:20554628 C/T MEIS3P1 chr17:15689932-15690889:+ -0.36 -8.92 1.02E-17 Box Plot
THCA rs643333 chr17:18267039 G/T LOC162632 chr17:16614993-16707819:+ 0.49 7.61 1.44E-13 Box Plot
THCA rs643388 chr11:77471042 C/T INTS4L1 chr7:64601603-64694600:+ 0.63 9.91 3.46E-21 Box Plot
THCA rs6436932 chr2:231258450 C/T PCGF3 chr4:699537-764428:+ 0.2 6.01 3.78E-9 Box Plot
THCA rs6438959 chr3:125759445 T/C ROPN1 chr3:123687368-123711025:- -0.34 -5.96 4.87E-9 Box Plot
THCA rs6438963 chr3:125774854 C/G ROPN1 chr3:123687368-123711025:- 0.33 5.92 6.25E-9 Box Plot
THCA rs6438964 chr3:125775428 G/A ROPN1 chr3:123687368-123711025:- 0.33 5.92 6.25E-9 Box Plot
THCA rs6438967 chr3:125792325 A/G ROPN1 chr3:123687368-123711025:- -0.33 -6.11 2.12E-9 Box Plot